Pasteur Courses

Microbiomes in Health and Diseases: mechanistic understanding for clinical implications

This intensive one-week advanced course will provide a conceptual and integrative exploration of host-microbiome ecosystems as dynamic auxiliary organs. This course is part of the Integrative Microbiome Program at Pasteur (IM2P): https://research.pasteur.fr/en/program_project/integrative-microbiome-program-at-pasteur/

Practical Information

  • 1 week
  • April 24, 2028 - April 28, 2028
  • Institut Pasteur
  • English

Contacts

enseignement@pasteur.fr

Registration

  • Deadline : January 1, 2028
  • Attendees : 30

Accreditations:

  • Institut Pasteur Diploma

Description

Moving beyond descriptive cataloging, the program will embrace a functional mechanistic approach to microbial communities—comprising bacteria, fungi, protozoa, and bacteriophages—that collectively play central roles in health and diseases trajectories. Through cross-cutting deep dives combining molecular microbiology, computational biology, immunology, and neuroscience, participants will examine microbiota-host communication governing metabolic homeostasis, immune education, neurological development, behavior, etc.. Dedicated sessions will explore microbiomes as active agents in physiology and as “living drugs,” from fecal transplantation to next-generation biotherapeutics, illuminating strategies to engineer these ecosystems for precision medicine. 1 day will be dedicated to metagenomic data analysis, from raw sequencing data to publishable figures.

  • Audience : Designed for PhD scientists, clinicians, biotechnologists, global health professionals and industrials, this Pasteur Course bridges fundamental microbial ecology and therapeutic implementation. Led by Benoit Chassaing with faculty across all Pasteur departments as well as international invited speakers, it convenes leading experts to equip participants with conceptual frameworks and integrative tools to decode microbiome complexity and participate in the clinical transition the field is currently facing.

Tentative program 

  • Session 1 – The Microbiome(s) : definition and function
    • 3 speakers
  • Session 2 – The Microbiome(s) in health and diseases
    • 4 speakers on intestinal health, metabolic health, and oncology

 

  • Session 3 –  Microbiome(s) modulation for health
    • 4 speakers on diet, fiber, probiotics, prebiotics, synbiotics, etc…

 

  • Session 4 – The Microbiome(s) in clinics – where do we stand ?
    • 3 speakers on FMT, next generation probiotics

 

  • Session 5 – The Microbiome(s) beyond the intestine
    • 4 speakers on the skin microbiome, the vaginal microbiome, and the lung microbiome

 

  • Session 6 – The Microbiome(s) beyond academia
    • 4 speakers from industry (Pileje, lallemand, Danone)

 

 

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Directors

CHASSAING Benoit * - Institut Pasteur

Members of the course committee

CHASSAING Benoit * - Institut Pasteur
CHERIET Samia - Institut Pasteur
LAMY BESNIER Quentin - Institut Pasteur
PONTICELLI Virginie - Institut Pasteur
SALA Monica - Institut Pasteur

* Representative of Universities